STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPA88962.1PFAM: O-antigen ligase like membrane protein. (462 aa)    
Predicted Functional Partners:
KPA88958.1
Glycosyltransferase; PFAM: Glycosyl transferases group 1.
 
 
 0.986
KPA88957.1
Putative protein involved in exopolysaccharide biosynthesis; PFAM: Chain length determinant protein.
 
  
 0.978
KPA88961.1
Glycosyltransferase; PFAM: Glycosyl transferases group 1; overlaps another CDS with the same product name.
 
 
 0.978
KPA88960.1
Glycosyltransferase; PFAM: Glycosyl transferases group 1; Glycosyl transferase 4-like domain; overlaps another CDS with the same product name.
 
 
 0.960
KPA88959.1
Beta-xylosidase; PFAM: Cellulase (glycosyl hydrolase family 5); Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
     0.952
KPA88964.1
Putative membrane protein, putative virulence factor; PFAM: MviN-like protein; TIGRFAM: murein biosynthesis integral membrane protein MurJ.
 
   
 0.939
KPA88956.1
PFAM: Polysaccharide biosynthesis/export protein; SLBB domain.
 
  
 0.938
KPA88954.1
PFAM: Bacterial sugar transferase; CoA-binding domain; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
 
  
 0.920
KPA88965.1
PFAM: Glycosyltransferase like family 2.
 
  
 0.902
KPA88963.1
Acetyltransferase (isoleucine patch superfamily).
 
     0.901
Your Current Organism:
Pseudomonas fuscovaginae
NCBI taxonomy Id: 50340
Other names: CCUG 32780, CFBP 2065, CIP 106695, DSM 7231, ICMP 5940, LMG 2158, LMG:2158, NCPPB 3085, P. fuscovaginae, PDDCC 5940, PDDCC:5940, Pseudomonas fuscivaginae, strain 6801
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.