STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPA88439.1PFAM: Helix-turn-helix domain; AraC-type transcriptional regulator N-terminus. (309 aa)    
Predicted Functional Partners:
KPA92430.1
Glutamate synthase (NADPH) large subunit; PFAM: Conserved region in glutamate synthase; GXGXG motif; Glutamate synthase central domain; Glutamine amidotransferases class-II.
    
  0.726
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.714
KPA92281.1
DNA-binding domain-containing protein, AraC-type; PFAM: Helix-turn-helix domain; Cupin.
  
   0.681
KPA86995.1
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain; PFAM: Helix-turn-helix domain; Cupin.
  
     0.591
KPA91481.1
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain; PFAM: Helix-turn-helix domain; AraC-binding-like domain.
  
     0.539
KPA90235.1
Transcriptional regulator, AraC family; PFAM: Helix-turn-helix domain.
  
   
 0.501
KPA88135.1
Transcriptional regulator, AraC family; PFAM: Helix-turn-helix domain.
  
     0.482
KPA90147.1
DNA-binding domain-containing protein, AraC-type; PFAM: Helix-turn-helix domain; Response regulator receiver domain.
  
  
  0.479
KPA88111.1
DNA-binding domain-containing protein, AraC-type; PFAM: Helix-turn-helix domain.
  
     0.471
KPA87727.1
Transcriptional regulator, AraC family; PFAM: Helix-turn-helix domain; AraC-like ligand binding domain.
  
     0.462
Your Current Organism:
Pseudomonas fuscovaginae
NCBI taxonomy Id: 50340
Other names: CCUG 32780, CFBP 2065, CIP 106695, DSM 7231, ICMP 5940, LMG 2158, LMG:2158, NCPPB 3085, P. fuscovaginae, PDDCC 5940, PDDCC:5940, Pseudomonas fuscivaginae, strain 6801
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.