STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPA88546.1Putative Zn-dependent protease; Functions as both a chaperone and a metalloprotease. Maintains the integrity of the outer membrane by promoting either the assembly or the elimination of outer membrane proteins, depending on their folding state. (477 aa)    
Predicted Functional Partners:
KPA92351.1
Membrane-bound metallopeptidase; PFAM: Peptidase family M23.
 
 
 
 0.778
ribB
GTP cyclohydrolase II /3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.771
ribB-2
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.771
KPA92794.1
Metalloendopeptidase-like membrane protein; PFAM: Peptidase family M23; LysM domain.
   
 
 0.747
KPA91929.1
Hypothetical protein.
   
 
 0.736
KPA90806.1
Hypothetical protein; PFAM: Secretion system effector C (SseC) like family.
   
 
 0.736
KPA87887.1
PFAM: Putative MetA-pathway of phenol degradation.
   
 
 0.736
KPA93257.1
PFAM: EAL domain; GGDEF domain; Response regulator receiver domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain.
    
 0.716
KPA90080.1
PFAM: HAMP domain; Methyl-accepting chemotaxis protein (MCP) signalling domain; CHASE3 domain.
    
 0.713
KPA90209.1
Methyl-accepting chemotaxis protein; PFAM: HAMP domain; Four helix bundle sensory module for signal transduction; Methyl-accepting chemotaxis protein (MCP) signalling domain.
    
 0.713
Your Current Organism:
Pseudomonas fuscovaginae
NCBI taxonomy Id: 50340
Other names: CCUG 32780, CFBP 2065, CIP 106695, DSM 7231, ICMP 5940, LMG 2158, LMG:2158, NCPPB 3085, P. fuscovaginae, PDDCC 5940, PDDCC:5940, Pseudomonas fuscivaginae, strain 6801
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