STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPA88072.1Phage baseplate assembly protein W; PFAM: Gene 25-like lysozyme. (108 aa)    
Predicted Functional Partners:
KPA88070.1
PFAM: Phage tail protein (Tail_P2_I); 'TIGRFAM: phage tail protein, P2 protein I family'.
 
 
 0.994
KPA88071.1
PFAM: Baseplate J-like protein.
 
 
 0.994
KPA88074.1
PFAM: Phage-related baseplate assembly protein; TIGRFAM: phage baseplate assembly protein V.
 
 
 0.990
KPA87022.1
PFAM: Phage Tail Protein X.
 
 
 0.989
KPA92723.1
Phage protein D; PFAM: Phage late control gene D protein (GPD).
 
 
 0.980
KPA88066.1
PFAM: Phage tail tube protein FII; 'TIGRFAM: phage contractile tail tube protein, P2 family'.
 
   0.980
KPA88067.1
PFAM: Phage tail sheath protein.
 
 
 0.980
KPA87168.1
PFAM: Phage tail tube protein FII; 'TIGRFAM: phage contractile tail tube protein, P2 family'.
 
   0.980
KPA87169.1
PFAM: Phage tail sheath protein.
 
 
 0.980
KPA87021.1
Phage protein D; PFAM: Phage late control gene D protein (GPD).
 
 
 0.980
Your Current Organism:
Pseudomonas fuscovaginae
NCBI taxonomy Id: 50340
Other names: CCUG 32780, CFBP 2065, CIP 106695, DSM 7231, ICMP 5940, LMG 2158, LMG:2158, NCPPB 3085, P. fuscovaginae, PDDCC 5940, PDDCC:5940, Pseudomonas fuscivaginae, strain 6801
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