STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPA87376.1Soluble lytic murein transglycosylase-like protein; PFAM: Transglycosylase SLT domain. (217 aa)    
Predicted Functional Partners:
KPA90798.1
Hypothetical protein.
  
  
 0.768
KPA90816.1
PFAM: Invasion protein B family.
   
    0.760
KPA88652.1
PFAM: Flagellar basal body rod FlgEFG protein C-terminal; Flagella basal body rod protein; 'TIGRFAM: flagellar hook-basal body protein; flagellar basal-body rod protein FlgG, Gram-negative bacteria'; Belongs to the flagella basal body rod proteins family.
  
 
 0.750
KPA90819.1
Type III secretion outer membrane pore, YscC/HrcC family; PFAM: Bacterial type II/III secretion system short domain; Bacterial type II and III secretion system protein; 'TIGRFAM: type III secretion outer membrane pore, YscC/HrcC family'.
 
  
 0.664
KPA89994.1
Acid phosphatase; PFAM: Phosphoesterase family; 'TIGRFAM: acid phosphatase, Burkholderia-type; Tat (twin-arginine translocation) pathway signal sequence'.
  
     0.626
KPA88678.1
Flagellar capping protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.
  
  
 0.593
fliE
PFAM: Flagellar hook-basal body complex protein FliE; TIGRFAM: flagellar hook-basal body complex protein FliE.
  
  
 0.562
KPA90815.1
ATPase FliI/YscN family; 'PFAM: ATP synthase alpha/beta family, beta-barrel domain; ATP synthase alpha/beta family, nucleotide-binding domain'; 'TIGRFAM: ATPase, FliI/YscN family'.
 
  
 0.558
KPA90812.1
Flagellar motor switch/type III secretory pathway protein; PFAM: Surface presentation of antigens (SPOA); TIGRFAM: type III secretion system apparatus protein YscQ/HrcQ.
 
  
 0.551
KPA87627.1
Putative ATPase; 'PFAM: Transcriptional regulatory protein, C terminal'.
  
    0.529
Your Current Organism:
Pseudomonas fuscovaginae
NCBI taxonomy Id: 50340
Other names: CCUG 32780, CFBP 2065, CIP 106695, DSM 7231, ICMP 5940, LMG 2158, LMG:2158, NCPPB 3085, P. fuscovaginae, PDDCC 5940, PDDCC:5940, Pseudomonas fuscivaginae, strain 6801
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