STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPA87236.1DNA replication protein; PFAM: IstB-like ATP binding protein. (260 aa)    
Predicted Functional Partners:
KPA87237.1
Transposase; PFAM: Helix-turn-helix domain; Integrase core domain.
 
  
 0.963
KPA92557.1
Primary replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.
  
 
 0.933
dnaA
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.
    
 
 0.759
KPA91117.1
Transposase; Required for the transposition of the insertion element.
  
     0.708
KPA87232.1
Transposase; PFAM: Integrase core domain.
 
     0.655
KPA87312.1
DNA replication protein; PFAM: IstB-like ATP binding protein.
  
     0.653
KPA90987.1
PFAM: Bacterial dnaA protein; TIGRFAM: DnaA regulatory inactivator Hda; Belongs to the DnaA family. HdA subfamily.
    
 
 0.616
KPA90368.1
Transposase; PFAM: HTH-like domain; Integrase core domain.
 
     0.566
KPA91719.1
PFAM: DDE superfamily endonuclease.
 
     0.529
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.518
Your Current Organism:
Pseudomonas fuscovaginae
NCBI taxonomy Id: 50340
Other names: CCUG 32780, CFBP 2065, CIP 106695, DSM 7231, ICMP 5940, LMG 2158, LMG:2158, NCPPB 3085, P. fuscovaginae, PDDCC 5940, PDDCC:5940, Pseudomonas fuscivaginae, strain 6801
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