FKW77_004991 protein (Venturia effusa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

FKW77_004991

FAD-binding PCMH-type domain-containing protein. (494 aa)

Predicted Functional Partners:

FKW77_003173

0.827

CYB2

0.827

FKW77_001602

0.827

FKW77_000150

0.827

FKW77_007843

0.644

FKW77_008222

0.633

FKW77_007792

0.631

SDH2

0.604

FKW77_010648

0.596

FKW77_005943

0.589

Your Current Organism:

Venturia effusa

NCBI taxonomy Id: 50376
Other names: Fusicladium effusum, V. effusa, Venturia effusa (G. Winter) Rossman & W.C. Allen 2016

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CYB2	FKW77_000150	A0A517LIC6	A0A517LM06	Cytochrome b2, mitochondrial.	Uncharacterized protein.	0.699
CYB2	FKW77_001602	A0A517LIC6	A0A517LJP1	Cytochrome b2, mitochondrial.	FMN hydroxy acid dehydrogenase domain-containing protein.	0.696
CYB2	FKW77_003173	A0A517LIC6	A0A517L8Y5	Cytochrome b2, mitochondrial.	Uncharacterized protein.	0.804
CYB2	FKW77_004991	A0A517LIC6	A0A517L988	Cytochrome b2, mitochondrial.	FAD-binding PCMH-type domain-containing protein.	0.827
CYB2	FKW77_005943	A0A517LIC6	A0A517KZI8	Cytochrome b2, mitochondrial.	Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family.	0.823
CYB2	FKW77_007792	A0A517LIC6	A0A517LLV7	Cytochrome b2, mitochondrial.	Uncharacterized protein.	0.720
CYB2	FKW77_007843	A0A517LIC6	A0A517L5S9	Cytochrome b2, mitochondrial.	Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.	0.936
CYB2	FKW77_010648	A0A517LIC6	A0A517KY27	Cytochrome b2, mitochondrial.	TPR_REGION domain-containing protein.	0.645
CYB2	SDH2	A0A517LIC6	A0A517KW46	Cytochrome b2, mitochondrial.	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	0.460
FKW77_000150	CYB2	A0A517LM06	A0A517LIC6	Uncharacterized protein.	Cytochrome b2, mitochondrial.	0.699
FKW77_000150	FKW77_001602	A0A517LM06	A0A517LJP1	Uncharacterized protein.	FMN hydroxy acid dehydrogenase domain-containing protein.	0.711
FKW77_000150	FKW77_003173	A0A517LM06	A0A517L8Y5	Uncharacterized protein.	Uncharacterized protein.	0.692
FKW77_000150	FKW77_004991	A0A517LM06	A0A517L988	Uncharacterized protein.	FAD-binding PCMH-type domain-containing protein.	0.827
FKW77_000150	FKW77_005943	A0A517LM06	A0A517KZI8	Uncharacterized protein.	Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family.	0.823
FKW77_000150	FKW77_007792	A0A517LM06	A0A517LLV7	Uncharacterized protein.	Uncharacterized protein.	0.720
FKW77_000150	FKW77_007843	A0A517LM06	A0A517L5S9	Uncharacterized protein.	Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.	0.936
FKW77_000150	FKW77_010648	A0A517LM06	A0A517KY27	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.645
FKW77_000150	SDH2	A0A517LM06	A0A517KW46	Uncharacterized protein.	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	0.460
FKW77_001602	CYB2	A0A517LJP1	A0A517LIC6	FMN hydroxy acid dehydrogenase domain-containing protein.	Cytochrome b2, mitochondrial.	0.696
FKW77_001602	FKW77_000150	A0A517LJP1	A0A517LM06	FMN hydroxy acid dehydrogenase domain-containing protein.	Uncharacterized protein.	0.711