STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N301_11977F-box/LRR-repeat protein 2. (404 aa)    
Predicted Functional Partners:
N301_09262
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
 0.909
N301_00223
Cullin-1; Belongs to the cullin family.
    
 0.831
N301_14038
Cullin-3; Belongs to the cullin family.
    
 0.705
N301_10307
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
    
 
 0.695
N301_07079
CDK2-associated and cullin domain-containing protein 1; Belongs to the cullin family.
    
 0.660
N301_05935
RING-box protein 1.
     
 0.618
N301_10107
F-box only protein 11.
   
 
 0.602
N301_15441
F-box only protein 25.
   
 
 0.549
N301_14061
RING-box protein 2.
     
 0.526
N301_12042
UV excision repair protein RAD23 B.
    
  0.516
Your Current Organism:
Charadrius vociferus
NCBI taxonomy Id: 50402
Other names: Aegialitis vocifera, C. vociferus, Charadrius vociferous, Oxyechus vociferus, killdeer
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.