STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N301_07781Opsin-5; Belongs to the G-protein coupled receptor 1 family. Opsin subfamily. (303 aa)    
Predicted Functional Partners:
N301_07729
Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.
   
 0.673
N301_11897
Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.
   
 0.673
N301_11162
Beta-arrestin-1.
   
 0.670
N301_01950
S-arrestin.
   
 0.670
N301_10016
Beta-arrestin-1.
   
 0.670
N301_03422
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-5.
    
  0.661
N301_14364
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-10.
    
  0.660
N301_07767
Guanine nucleotide-binding protein subunit beta-4.
    
  0.649
N301_07476
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3.
    
  0.637
N301_00057
Guanine nucleotide-binding protein subunit beta-4.
    
  0.637
Your Current Organism:
Charadrius vociferus
NCBI taxonomy Id: 50402
Other names: Aegialitis vocifera, C. vociferus, Charadrius vociferous, Oxyechus vociferus, killdeer
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