STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N301_12944Vacuolar protein sorting-associated protein 4B. (149 aa)    
Predicted Functional Partners:
N301_08655
Vacuolar protein sorting-associated protein 4A; Belongs to the AAA ATPase family.
 
     0.942
N301_12945
Vacuolar protein sorting-associated protein 4B; Belongs to the AAA ATPase family.
 
     0.933
N301_01737
Vacuolar protein sorting-associated protein VTA1.
   
 0.927
N301_14862
Charged multivesicular body protein 2a.
    
 0.925
N301_01032
Charged multivesicular body protein 6.
    
 0.925
N301_08671
IST1.
   
 0.919
N301_02692
Charged multivesicular body protein 4c.
    
 0.887
N301_11175
Charged multivesicular body protein 1b.
   
 0.886
N301_08946
Charged multivesicular body protein 1a.
   
 0.886
N301_07156
Charged multivesicular body protein 2b.
   
 0.880
Your Current Organism:
Charadrius vociferus
NCBI taxonomy Id: 50402
Other names: Aegialitis vocifera, C. vociferus, Charadrius vociferous, Oxyechus vociferus, killdeer
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