STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N301_08209Ras-related protein Rab-27A. (221 aa)    
Predicted Functional Partners:
N301_14492
Synaptotagmin-like 2.
    
 
 0.805
N301_11193
Rab proteins geranylgeranyltransferase component A 2.
    
 0.728
N301_11209
Synaptotagmin-like 4.
   
 
 0.727
N301_00972
MAP kinase-activating death domain protein.
     
 0.714
N301_08470
Rabphilin-3A.
    
 
 0.678
N301_04904
Synaptotagmin-like 5.
   
 
 0.677
N301_07987
Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.
     
 0.641
N301_11966
Rab effector MyRIP.
    
 0.619
N301_11967
Rab effector MyRIP.
    
 0.619
N301_01758
Synaptotagmin-like 3.
   
 
 0.608
Your Current Organism:
Charadrius vociferus
NCBI taxonomy Id: 50402
Other names: Aegialitis vocifera, C. vociferus, Charadrius vociferous, Oxyechus vociferus, killdeer
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