STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N301_02112Bromodomain adjacent to zinc finger domain protein 1A. (1530 aa)    
Predicted Functional Partners:
N301_04952
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5.
    
 0.963
N301_14487
Putative global transcription activator SNF2L1.
    
 0.963
N301_09842
DNA polymerase epsilon subunit 3.
    
 
 0.960
N301_06830
Chromatin accessibility complex protein 1.
    
 
 0.884
N301_03190
Chromodomain-helicase-DNA-binding protein 1-like.
    
 0.836
N301_10711
Lymphoid-specific helicase.
    
 0.836
N301_15952
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.835
N301_10657
DNA excision repair protein ERCC-6.
    
 0.734
N301_12281
Myb-binding protein 1A-like.
    
 0.715
N301_00991
PHD finger protein 21A.
   
0.709
Your Current Organism:
Charadrius vociferus
NCBI taxonomy Id: 50402
Other names: Aegialitis vocifera, C. vociferus, Charadrius vociferous, Oxyechus vociferus, killdeer
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.