STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N301_01558SKI/DACH domain-containing protein 1. (534 aa)    
Predicted Functional Partners:
N301_03237
Histone H2A deubiquitinase MYSM1.
   
 0.893
N301_07766
Actin-like 6A; Belongs to the actin family.
    
 0.840
N301_15064
Protein polybromo-1.
    
 0.833
N301_03627
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1.
   
 0.823
N301_14286
PHD finger protein 10.
    
 0.774
N301_15698
SWI/SNF complex subunit SMARCC1.
    
 0.772
N301_15952
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.757
N301_12062
AT-rich interactive domain-containing protein 2.
    
 0.749
N301_16737
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3.
    
 0.745
N301_12902
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1.
    
 0.745
Your Current Organism:
Charadrius vociferus
NCBI taxonomy Id: 50402
Other names: Aegialitis vocifera, C. vociferus, Charadrius vociferous, Oxyechus vociferus, killdeer
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.