STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N301_14879AT-rich interactive domain-containing protein 5B. (1092 aa)    
Predicted Functional Partners:
N301_04572
Lysine-specific demethylase 7.
     
 0.695
N301_02242
Histone deacetylase complex subunit SAP30.
    
 0.669
N301_12211
Histone deacetylase complex subunit SAP30L.
    
 0.669
N301_08705
UPF0547 protein C16orf87.
    
 
 0.667
N301_15689
Histone deacetylase 8.
    
 0.651
N301_02531
Histone deacetylase 1.
    
 0.651
N301_15064
Protein polybromo-1.
   
 
 0.651
N301_08967
Histone deacetylase 2.
    
 0.651
N301_03237
Histone H2A deubiquitinase MYSM1.
   
 
 0.650
N301_15643
Histone deacetylase 3.
    
 0.647
Your Current Organism:
Charadrius vociferus
NCBI taxonomy Id: 50402
Other names: Aegialitis vocifera, C. vociferus, Charadrius vociferous, Oxyechus vociferus, killdeer
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.