N301_15716 protein (Charadrius vociferus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

N301_15716

Dead end protein 1. (99 aa)

Predicted Functional Partners:

N301_05234

0.752

N301_07674

0.667

N301_06456

0.660

N301_01450

0.658

N301_12321

0.658

N301_15551

0.641

N301_12845

0.637

N301_14806

0.637

N301_04839

0.625

N301_02053

0.625

Your Current Organism:

Charadrius vociferus

NCBI taxonomy Id: 50402
Other names: Aegialitis vocifera, C. vociferus, Charadrius vociferous, Oxyechus vociferus, killdeer

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N301_01450	N301_02053	A0A0A0A502	A0A0A0AZ91	RNA-binding protein EWS.	Heterogeneous nuclear ribonucleoprotein L-like.	0.730
N301_01450	N301_04839	A0A0A0A502	A0A0A0ATE0	RNA-binding protein EWS.	Heterogeneous nuclear ribonucleoprotein L.	0.730
N301_01450	N301_05234	A0A0A0A502	A0A0A0AS93	RNA-binding protein EWS.	Deleted in azoospermia-like.	0.460
N301_01450	N301_06456	A0A0A0A502	A0A0A0A6W7	RNA-binding protein EWS.	Heterogeneous nuclear ribonucleoproteins A2/B1.	0.861
N301_01450	N301_07674	A0A0A0A502	A0A0A0B1S2	RNA-binding protein EWS.	Heterogeneous nuclear ribonucleoprotein U.	0.761
N301_01450	N301_12321	A0A0A0A502	A0A0A0AGS8	RNA-binding protein EWS.	TATA-binding protein-associated factor 2N.	0.577
N301_01450	N301_12845	A0A0A0A502	A0A0A0A1K2	RNA-binding protein EWS.	Y-box-binding protein 3.	0.689
N301_01450	N301_14806	A0A0A0A502	A0A0A0AUB3	RNA-binding protein EWS.	Nuclease-sensitive element-binding protein 1.	0.793
N301_01450	N301_15551	A0A0A0A502	A0A0A0AYM9	RNA-binding protein EWS.	Serine/arginine-rich splicing factor 3.	0.753
N301_01450	N301_15716	A0A0A0A502	A0A0A0AV10	RNA-binding protein EWS.	Dead end protein 1.	0.658
N301_02053	N301_01450	A0A0A0AZ91	A0A0A0A502	Heterogeneous nuclear ribonucleoprotein L-like.	RNA-binding protein EWS.	0.730
N301_02053	N301_05234	A0A0A0AZ91	A0A0A0AS93	Heterogeneous nuclear ribonucleoprotein L-like.	Deleted in azoospermia-like.	0.442
N301_02053	N301_06456	A0A0A0AZ91	A0A0A0A6W7	Heterogeneous nuclear ribonucleoprotein L-like.	Heterogeneous nuclear ribonucleoproteins A2/B1.	0.860
N301_02053	N301_07674	A0A0A0AZ91	A0A0A0B1S2	Heterogeneous nuclear ribonucleoprotein L-like.	Heterogeneous nuclear ribonucleoprotein U.	0.803
N301_02053	N301_12321	A0A0A0AZ91	A0A0A0AGS8	Heterogeneous nuclear ribonucleoprotein L-like.	TATA-binding protein-associated factor 2N.	0.768
N301_02053	N301_12845	A0A0A0AZ91	A0A0A0A1K2	Heterogeneous nuclear ribonucleoprotein L-like.	Y-box-binding protein 3.	0.637
N301_02053	N301_14806	A0A0A0AZ91	A0A0A0AUB3	Heterogeneous nuclear ribonucleoprotein L-like.	Nuclease-sensitive element-binding protein 1.	0.676
N301_02053	N301_15551	A0A0A0AZ91	A0A0A0AYM9	Heterogeneous nuclear ribonucleoprotein L-like.	Serine/arginine-rich splicing factor 3.	0.748
N301_02053	N301_15716	A0A0A0AZ91	A0A0A0AV10	Heterogeneous nuclear ribonucleoprotein L-like.	Dead end protein 1.	0.625
N301_04839	N301_01450	A0A0A0ATE0	A0A0A0A502	Heterogeneous nuclear ribonucleoprotein L.	RNA-binding protein EWS.	0.730