STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N301_06881Histone deacetylase complex subunit SAP18. (92 aa)    
Predicted Functional Partners:
N301_13108
RNA-binding protein with serine-rich domain 1.
   
 0.996
N301_02139
Pinin.
    
 0.988
N301_08862
AT-rich interactive domain-containing protein 4A.
   
 
 0.987
N301_15237
AT-rich interactive domain-containing protein 4B.
   
 
 0.987
N301_00348
Polyadenylate-binding protein 2.
   
 0.951
N301_02055
Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family.
   
 0.895
N301_05718
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
   
 0.889
N301_09320
THO complex subunit 4.
   
 
 0.881
N301_03274
Protein mago nashi 2.
   
 0.867
N301_05394
RNA-binding protein 39.
    
 0.831
Your Current Organism:
Charadrius vociferus
NCBI taxonomy Id: 50402
Other names: Aegialitis vocifera, C. vociferus, Charadrius vociferous, Oxyechus vociferus, killdeer
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.