STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
N301_05664Protein AATF. (541 aa)    
Predicted Functional Partners:
N301_01151
N-acetyltransferase 10.
   
 
 0.998
N301_06674
Nucleolar protein 10.
   
 
 0.998
N301_16020
Nucleolar protein 14.
   
 
 0.998
N301_05501
U3 small nucleolar RNA-associated protein 14 A.
   
 
 0.998
N301_10100
WD repeat-containing protein 43.
   
 
 0.997
N301_03151
WD repeat-containing protein 3.
   
 
 0.997
N301_14156
U3 small nucleolar RNA-associated protein 6.
   
 
 0.996
N301_14093
Ribosome biogenesis protein BMS1.
   
 
 0.996
N301_02471
Nucleolar protein 58.
   
 
 0.996
N301_02576
DDB1-and CUL4-associated factor 13.
   
   0.996
Your Current Organism:
Charadrius vociferus
NCBI taxonomy Id: 50402
Other names: Aegialitis vocifera, C. vociferus, Charadrius vociferous, Oxyechus vociferus, killdeer
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.