STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Prpf6Pre-mRNA-processing factor 6. (937 aa)    
Predicted Functional Partners:
Prpf8
Pre-mRNA-processing-splicing factor 8.
   
 0.998
Eftud2
116 kDa U5 small nuclear ribonucleoprotein component.
   
 0.998
SNRNP40
U5 small nuclear ribonucleoprotein 40 kDa protein.
   
 0.998
SNRNP200
U5 small nuclear ribonucleoprotein 200 kDa helicase.
   
 0.998
Txnl4a
Thioredoxin-like protein 4A.
    
 0.997
snrpd3
Small nuclear ribonucleoprotein Sm D3.
   
 0.996
SART1
U4/U6.U5 tri-snRNP-associated protein 1.
   
 0.995
prpf31
U4/U6 small nuclear ribonucleoprotein Prp31.
   
 0.995
PRPF3
U4/U6 small nuclear ribonucleoprotein Prp3.
   
 0.995
PRPF4
U4/U6 small nuclear ribonucleoprotein Prp4.
   
 0.995
Your Current Organism:
Stylophora pistillata
NCBI taxonomy Id: 50429
Other names: S. pistillata
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.