STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ddx20Putative ATP-dependent RNA helicase DDX20. (947 aa)    
Predicted Functional Partners:
SMN1
Survival motor neuron protein.
    
 0.997
GEMIN4
Gem-associated protein 4.
   
 0.996
Gemin5
Gem-associated protein 5.
   
 0.996
GEMIN8
Gem-associated protein 8.
    
 0.991
gemin2
Gem-associated protein 2.
   
 0.985
Snrpd1
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
    
 0.812
SmF
Small nuclear ribonucleoprotein F.
    
 0.808
STRAP
Serine-threonine kinase receptor-associated protein.
    
 
 0.804
NUP214
Nuclear pore complex protein Nup214.
    
 0.801
snrpe
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.782
Your Current Organism:
Stylophora pistillata
NCBI taxonomy Id: 50429
Other names: S. pistillata
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