STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YTM1Ribosome biogenesis protein YTM1. (1451 aa)    
Predicted Functional Partners:
retsat
Putative all-trans-retinol 13,14-reductase.
  
 
 0.962
R3HDM4
R3H domain-containing protein 4.
   
 
 0.903
FAXDC2
Fatty acid hydroxylase domain-containing protein 2.
  
 
 0.830
ndufaf5
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 5.
   
 0.779
TBP
TATA-box-binding protein.
   
  
 0.767
NDUFS3
NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial; Belongs to the complex I 30 kDa subunit family.
   
 0.738
NDUFAB1
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 
 0.730
COQ2
4-hydroxybenzoate polyprenyltransferase, mitochondrial.
  
 
 0.721
dgk
Deoxyguanosine kinase.
   
 0.717
IDI1
Isopentenyl-diphosphate Delta-isomerase 1.
  
  
 0.682
Your Current Organism:
Stylophora pistillata
NCBI taxonomy Id: 50429
Other names: S. pistillata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.