Lonrf3-3 protein (Stylophora pistillata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Lonrf3-3

LON peptidase N-terminal domain and RING finger protein 3. (682 aa)

Predicted Functional Partners:

RpL40

0.595

Ubc

0.595

Tp53bp1

0.579

trip12

0.575

UBE2N

0.559

MDC1

0.509

Rnf8

0.505

Ube2v1

0.488

BRCA1

0.478

XRCC6

0.466

Your Current Organism:

Stylophora pistillata

NCBI taxonomy Id: 50429
Other names: S. pistillata

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BRCA1	Lonrf3-3	A0A2B4SM42	A0A2B4SRS9	Breast cancer type 1 susceptibility protein-like.	LON peptidase N-terminal domain and RING finger protein 3.	0.478
BRCA1	MDC1	A0A2B4SM42	A0A2B4S509	Breast cancer type 1 susceptibility protein-like.	Mediator of DNA damage checkpoint protein 1.	0.873
BRCA1	Rnf8	A0A2B4SM42	A0A2B4RXJ7	Breast cancer type 1 susceptibility protein-like.	E3 ubiquitin-protein ligase RNF8.	0.768
BRCA1	RpL40	A0A2B4SM42	A0A2B4RRZ9	Breast cancer type 1 susceptibility protein-like.	Ubiquitin-60S ribosomal protein L40.	0.604
BRCA1	Tp53bp1	A0A2B4SM42	A0A2B4SNX2	Breast cancer type 1 susceptibility protein-like.	Tumor suppressor p53-binding protein 1.	0.932
BRCA1	UBE2N	A0A2B4SM42	A0A2B4RWZ0	Breast cancer type 1 susceptibility protein-like.	Ubiquitin-conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family.	0.714
BRCA1	Ubc	A0A2B4SM42	A0A2B4S377	Breast cancer type 1 susceptibility protein-like.	Polyubiquitin-C.	0.622
BRCA1	XRCC6	A0A2B4SM42	A0A2B4SAB1	Breast cancer type 1 susceptibility protein-like.	X-ray repair cross-complementing protein 5.	0.672
Lonrf3-3	BRCA1	A0A2B4SRS9	A0A2B4SM42	LON peptidase N-terminal domain and RING finger protein 3.	Breast cancer type 1 susceptibility protein-like.	0.478
Lonrf3-3	MDC1	A0A2B4SRS9	A0A2B4S509	LON peptidase N-terminal domain and RING finger protein 3.	Mediator of DNA damage checkpoint protein 1.	0.509
Lonrf3-3	Rnf8	A0A2B4SRS9	A0A2B4RXJ7	LON peptidase N-terminal domain and RING finger protein 3.	E3 ubiquitin-protein ligase RNF8.	0.505
Lonrf3-3	RpL40	A0A2B4SRS9	A0A2B4RRZ9	LON peptidase N-terminal domain and RING finger protein 3.	Ubiquitin-60S ribosomal protein L40.	0.595
Lonrf3-3	Tp53bp1	A0A2B4SRS9	A0A2B4SNX2	LON peptidase N-terminal domain and RING finger protein 3.	Tumor suppressor p53-binding protein 1.	0.579
Lonrf3-3	UBE2N	A0A2B4SRS9	A0A2B4RWZ0	LON peptidase N-terminal domain and RING finger protein 3.	Ubiquitin-conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family.	0.559
Lonrf3-3	Ubc	A0A2B4SRS9	A0A2B4S377	LON peptidase N-terminal domain and RING finger protein 3.	Polyubiquitin-C.	0.595
Lonrf3-3	Ube2v1	A0A2B4SRS9	A0A2B4SVM9	LON peptidase N-terminal domain and RING finger protein 3.	Ubiquitin-conjugating enzyme E2 variant 1; Belongs to the G-protein coupled receptor 1 family.	0.488
Lonrf3-3	XRCC6	A0A2B4SRS9	A0A2B4SAB1	LON peptidase N-terminal domain and RING finger protein 3.	X-ray repair cross-complementing protein 5.	0.466
Lonrf3-3	trip12	A0A2B4SRS9	A0A2B4S7P7	LON peptidase N-terminal domain and RING finger protein 3.	E3 ubiquitin-protein ligase TRIP12.	0.575
MDC1	BRCA1	A0A2B4S509	A0A2B4SM42	Mediator of DNA damage checkpoint protein 1.	Breast cancer type 1 susceptibility protein-like.	0.873
MDC1	Lonrf3-3	A0A2B4S509	A0A2B4SRS9	Mediator of DNA damage checkpoint protein 1.	LON peptidase N-terminal domain and RING finger protein 3.	0.509