STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OtpHomeobox protein orthopedia. (312 aa)    
Predicted Functional Partners:
COPZ1
Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.
      
 0.529
ARNT
Aryl hydrocarbon receptor nuclear translocator.
      
 0.512
PXN
Paxillin.
    
 
 0.494
Pax6
Paired box protein Pax-6.
    
 
 0.464
SIX6
Homeobox protein SIX6.
      
 0.428
Spdef
SAM pointed domain-containing Ets transcription factor.
      
 0.418
Tgfbi
Transforming growth factor-beta-induced protein ig-h3.
      
 0.410
Atoh8
Protein atonal-like 8.
      
 0.406
Your Current Organism:
Stylophora pistillata
NCBI taxonomy Id: 50429
Other names: S. pistillata
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