STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0019PFAM: peptidase M16 domain protein; KEGG: slo:Shew_3581 peptidase M16 domain-containing protein. (413 aa)    
Predicted Functional Partners:
Slin_5951
PFAM: peptidase M16 domain protein; KEGG: ank:AnaeK_0110 peptidase M16 domain protein.
     0.977
Slin_5792
PFAM: peptidase M16 domain protein; KEGG: slo:Shew_3580 peptidase M16 domain-containing protein.
    
0.930
Slin_5103
NADH-quinone oxidoreductase, F subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.
   
 
 0.771
Slin_1751
PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: ank:AnaeK_3259 Rieske (2Fe-2S) domain protein.
   
 0.746
Slin_4885
PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: gsu:GSU1650 cytochrome b/b6 complex, iron- sulfur subunit.
   
 0.746
Slin_0018
PFAM: DNA polymerase beta domain protein region; KEGG: rfe:RF_1280 nucleotidyltransferase/HEPN domain-containing protein.
  
    0.738
Slin_0017
Hypothetical protein.
       0.721
Slin_5104
PFAM: NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; ferredoxin; KEGG: rak:A1C_06150 NADH dehydrogenase subunit G.
   
 
 0.692
ispF
2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2- C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP).
       0.681
Slin_5102
KEGG: wol:WD0734 NADH dehydrogenase subunit E; TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit.
   
 
 0.677
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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