STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0038PFAM: peptidase S45 penicillin amidase; KEGG: bpt:Bpet2420 beta-lactam antibiotic acylase family protein. (807 aa)    
Predicted Functional Partners:
Slin_5658
PFAM: peptidase S45 penicillin amidase; KEGG: reu:Reut_A1841 penicillin amidase.
  
  
 
0.926
Slin_3212
PFAM: beta-lactamase; KEGG: vvu:VV1_0001 putative beta-lactamase class A.
     
  0.900
Slin_3334
PFAM: beta-lactamase; KEGG: sat:SYN_01571 beta-lactamase class A.
     
  0.900
Slin_5194
PFAM: beta-lactamase; KEGG: vvu:VV1_0001 putative beta-lactamase class A.
     
  0.900
Slin_0037
Hypothetical protein.
       0.536
argS
arginyl-tRNA synthetase; KEGG: bba:Bd2027 hypothetical protein; TIGRFAM: arginyl-tRNA synthetase.
       0.492
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.