STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0045Hypothetical protein; KEGG: scl:sce8068 putative transposase. (341 aa)    
Predicted Functional Partners:
Slin_0046
PFAM: OmpA/MotB domain protein; KEGG: afw:Anae109_3770 OmpA/MotB domain-containing protein.
 
     0.804
Slin_6036
KEGG: gur:Gura_3957 hypothetical protein.
  
     0.569
Slin_1329
PFAM: Protein of unknown function DUF2442; KEGG: gur:Gura_3956 hypothetical protein.
  
     0.568
Slin_1330
KEGG: glo:Glov_2136 hypothetical protein.
  
     0.559
Slin_1695
KEGG: rpe:RPE_0295 hypothetical protein.
  
     0.525
Slin_4968
PFAM: protein of unknown function DUF820; KEGG: lch:Lcho_2361 hypothetical protein.
  
   
 0.520
Slin_1092
KEGG: maq:Maqu_2522 hypothetical protein.
  
     0.466
ileS
isoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 2 subfamily.
       0.456
Slin_0047
PFAM: oxidoreductase domain protein; KEGG: ara:Arad_9633 myo-inositol dehydrogenase protein.
       0.449
Slin_4612
KEGG: plu:plu3301 hypothetical protein.
  
     0.442
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.