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Slin_0046 protein (Spirosoma linguale) - STRING interaction network
"Slin_0046" - OmpA/MotB domain-containing protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0046OmpA/MotB domain-containing protein (432 aa)    
Predicted Functional Partners:
Slin_0045
Hypothetical protein (341 aa)
 
          0.883
Slin_1912
Periplasmic component of the Tol biopolymer transport system-like protein (512 aa)
   
 
  0.746
Slin_5728
OmpA/MotB domain-containing protein (294 aa)
   
 
 
  0.741
Slin_4937
Polysaccharide export protein (800 aa)
     
    0.626
Slin_2568
Ligand-binding protein (812 aa)
     
    0.626
Slin_0999
Hypothetical protein (402 aa)
   
 
  0.584
Slin_4434
Outer membrane protein assembly complex, YaeT protein (865 aa)
   
 
  0.546
Slin_5087
MotA/TolQ/ExbB proton channel (277 aa)
 
     
  0.528
ileS
isoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as ’pretransfer’ editing and involves the hydrolysis of activated Val-AMP. The other activity is designated ’posttransfer’ editing and involves deacylation of mischarged Val-tRNA(Ile) (1148 aa)
         
  0.527
Slin_3219
Hypothetical protein (749 aa)
   
          0.526
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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