STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0057PFAM: protein of unknown function DUF262; KEGG: sbm:Shew185_0970 hypothetical protein. (341 aa)    
Predicted Functional Partners:
Slin_0056
KEGG: sbm:Shew185_0971 hypothetical protein.
       0.780
Slin_3408
KEGG: dat:HRM2_15020 putative ATP-dependent endonuclease (OLD family protein).
 
     0.633
Slin_1978
KEGG: nmu:Nmul_B2799 hypothetical protein.
   
 
 0.595
Slin_0058
PFAM: Glycoside hydrolase 97; KEGG: sfr:Sfri_1777 alpha-glucosidase.
       0.473
Slin_0054
KEGG: asa:ASA_3858 hypothetical protein.
       0.466
Slin_0055
KEGG: hypothetical protein.
       0.466
Slin_1691
PFAM: SMC domain protein; KEGG: ajs:Ajs_0828 hypothetical protein.
 
     0.409
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.