STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0096PFAM: Ppx/GppA phosphatase; KEGG: hypothetical protein. (306 aa)    
Predicted Functional Partners:
Slin_1611
(p)ppGpp synthetase I, SpoT/RelA; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
 
 
 0.932
Slin_4256
PFAM: Ppx/GppA phosphatase; KEGG: bba:Bd1014 hypothetical protein.
  
  
 
0.927
Slin_0404
PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: glo:Glov_2329 metal dependent phosphohydrolase.
  
 
 0.910
ppk
Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family.
 
  
 0.854
Slin_3473
3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).
 
 
    0.849
rpsU
TIGRFAM: ribosomal protein S21; PFAM: ribosomal protein S21; KEGG: bac:BamMC406_5585 ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
       0.585
Slin_0084
PFAM: 3-dehydroquinate synthase; KEGG: nha:Nham_0984 3-dehydroquinate synthase.
 
 
    0.569
Slin_5338
PFAM: protein of unknown function DUF344; KEGG: noc:Noc_2224 hypothetical protein.
 
  
 0.433
Slin_5339
PFAM: protein of unknown function DUF344; KEGG: pat:Patl_0210 hypothetical protein.
 
  
 0.429
Slin_5979
Ribonuclease, Rne/Rng family; KEGG: gur:Gura_0301 ribonuclease; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; RNA binding S1 domain protein.
  
     0.415
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.