STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0103KEGG: ilo:IL2386 4-coumarate-CoA ligase, putative. (367 aa)    
Predicted Functional Partners:
Slin_0102
KEGG: bpy:Bphyt_1582 photoactive yellow protein.
     
 0.783
rplF
Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
 0.701
Slin_0451
PFAM: cytochrome P450; KEGG: mxa:MXAN_2304 cytochrome P450 family protein.
  
 0.685
Slin_4424
PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: mxa:MXAN_5136 3-hydroxyacyl-CoA dehydrogenase.
  
 
 0.675
Slin_6109
PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: pla:Plav_0465 3-hydroxyacyl-CoA dehydrogenase NAD-binding.
  
 
 0.675
Slin_0101
PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; KEGG: hch:HCH_04931 signal transduction histidine kinase.
  
    0.653
rplQ
TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17; KEGG: aav:Aave_0627 50S ribosomal protein L17P.
  
 
   0.605
rplB
Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.
   
 
 0.573
Slin_0099
Multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; GAF domain protein; PAS fold-2 domain protein; Phytochrome central region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; KEGG: met:M446_2206 GAF sensor signal transduction histidine kinase.
       0.572
Slin_0100
PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: ppd:Ppro_3011 response regulator receiver protein.
       0.572
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.