STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0115PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rhi:NGR_b19930 putative sugar phosphate isomerase/epimerase. (293 aa)    
Predicted Functional Partners:
Slin_2650
Hypothetical protein.
  
     0.750
Slin_0417
PFAM: Protein of unknown function DUF2261, transmembrane; KEGG: son:SO_3504 hypothetical protein.
  
     0.596
Slin_3008
KEGG: competence protein ComEC.
  
     0.591
Slin_0602
KEGG: cak:Caul_0966 hypothetical protein.
  
     0.583
Slin_2978
KEGG: eca:ECA3785 hypothetical protein.
  
     0.583
Slin_0639
PFAM: protein of unknown function DUF1080; KEGG: pzu:PHZ_c2159 hypothetical protein.
  
     0.572
Slin_4581
KEGG: cak:Caul_0966 hypothetical protein.
  
     0.529
Slin_6276
Hypothetical protein; KEGG: sme:SM_b21056 esterase.
 
     0.527
Slin_2345
PFAM: oxidoreductase molybdopterin binding; KEGG: cak:Caul_2730 hypothetical protein.
  
     0.525
Slin_0813
PFAM: protein of unknown function DUF1080; KEGG: pzu:PHZ_c2159 hypothetical protein.
  
     0.518
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.