STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0149Sarcosine oxidase; PFAM: FAD dependent oxidoreductase; KEGG: met:M446_0118 sarcosine oxidase. (385 aa)    
Predicted Functional Partners:
Slin_0150
KEGG: mxa:MXAN_0821 TonB family protein.
       0.737
gcvT
Glycine cleavage system T protein; The glycine cleavage system catalyzes the degradation of glycine.
  
 
 0.658
Slin_1785
PFAM: aminotransferase class V; KEGG: rlt:Rleg2_5012 aminotransferase class V.
 
      0.650
Slin_2612
PFAM: aminotransferase class V; KEGG: scl:sce8911 class-V aminotransferase.
 
      0.581
Slin_0151
Hypothetical protein.
       0.504
Slin_2266
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
  
  
 0.469
Slin_6268
PFAM: Nitric oxide synthase NOS; FAD-binding domain protein; flavodoxin/nitric oxide synthase; globin; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: NOS; nitric oxide synthase; K00491 nitric-oxide synthase.
  
  
 0.436
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.