STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0150KEGG: mxa:MXAN_0821 TonB family protein. (822 aa)    
Predicted Functional Partners:
Slin_0149
Sarcosine oxidase; PFAM: FAD dependent oxidoreductase; KEGG: met:M446_0118 sarcosine oxidase.
       0.737
Slin_2373
Hypothetical protein; KEGG: mxa:MXAN_0823 ICE-like protease.
 
     0.699
Slin_3994
PFAM: regulatory protein TetR; KEGG: azc:AZC_4590 transcriptional regulator.
  
     0.619
Slin_3521
TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: dds:Ddes_2085 TonB family protein.
  
   0.553
Slin_6114
KEGG: hypothetical protein.
  
     0.544
Slin_0151
Hypothetical protein.
       0.527
Slin_6006
Hypothetical protein.
  
     0.518
Slin_6092
Hypothetical protein.
  
     0.488
Slin_3327
Hypothetical protein; KEGG: gur:Gura_2036 fibronectin, type III domain- containing protein.
  
     0.486
Slin_3523
TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: mxa:MXAN_6485 ferric siderophore transporter, periplasmic energy transduction protein TonB.
  
   0.464
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.