STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0152KEGG: ecz:ECS88_4904 putative integral membrane protein; putative sugar permease. (335 aa)    
Predicted Functional Partners:
Slin_2648
PFAM: ADP-ribosylation/Crystallin J1; KEGG: hypothetical protein.
 
     0.757
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
  
 0.548
Slin_4320
PFAM: Glycosyl hydrolase family 32 domain protein; KEGG: mxa:MXAN_5247 glycosy hydrolase family protein; Belongs to the glycosyl hydrolase 43 family.
  
   
 0.482
Slin_5049
PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: hypothetical protein.
 
    0.449
Slin_0437
PFAM: oxidoreductase domain protein; KEGG: sea:SeAg_B4707 inositol 2-dehydrogenase.
  
     0.448
Slin_0151
Hypothetical protein.
       0.416
Slin_1842
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rhi:NGR_b21640 putative sugar phosphate isomerase/epimerase IoIE.
  
     0.415
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.