STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0188PFAM: Ig family protein; KEGG: avi:Avi_5260 hypothetical protein. (891 aa)    
Predicted Functional Partners:
Slin_5223
PFAM: major facilitator superfamily MFS_1; KEGG: cak:Caul_1194 major facilitator transporter.
  
     0.469
Slin_0185
PFAM: Ig family protein; KEGG: avi:Avi_5260 hypothetical protein.
 
    
0.451
Slin_0189
Hypothetical protein.
       0.433
Slin_0187
Hypothetical protein.
       0.409
Slin_0610
PFAM: protein of unknown function DUF6 transmembrane; KEGG: fph:Fphi_1728 drug/metabolite transporter superfamily protein.
  
     0.408
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.