STRINGSTRING
Slin_0216 protein (Spirosoma linguale) - STRING interaction network
"Slin_0216" - Hypothetical protein in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0216Hypothetical protein (108 aa)    
Predicted Functional Partners:
Slin_4754
Hypothetical protein (257 aa)
   
          0.714
Slin_5854
Outer membrane lipoprotein carrier protein LolA (213 aa)
   
          0.702
Slin_2038
Hypothetical protein (1024 aa)
   
          0.695
Slin_5927
Hypothetical protein (168 aa)
   
          0.672
Slin_4280
Hypothetical protein (108 aa)
   
          0.572
Slin_5392
beta-N-acetylhexosaminidase (953 aa)
 
          0.566
Slin_4196
Glycoside hydrolase (1002 aa)
 
          0.566
Slin_5567
Rhomboid family protein (308 aa)
   
          0.542
Slin_1252
Cell wall hydrolase/autolysin (347 aa)
   
          0.537
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination (230 aa)
   
          0.536
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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