STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0221PFAM: protein of unknown function DUF306 Meta and HslJ; lipase class 3; KEGG: afr:AFE_0115 hypothetical protein. (484 aa)    
Predicted Functional Partners:
Slin_0222
KEGG: nmu:Nmul_A2150 amine oxidase.
       0.584
Slin_6525
KEGG: spc:Sputcn32_2678 hypothetical protein.
  
     0.502
Slin_1000
PFAM: GHMP kinase domain protein; GHMP kinase; KEGG: hypothetical protein.
  
     0.501
Slin_3426
KEGG: hypothetical protein.
  
     0.477
Slin_6418
PFAM: glycosyl transferase family 39; KEGG: afw:Anae109_0521 glycosyl transferase family protein.
  
     0.468
Slin_3259
Putative transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; KEGG: scl:sce4622 cAMP-binding protein.
  
    0.465
Slin_3372
KEGG: gur:Gura_0126 hypothetical protein.
  
     0.434
Slin_1383
KEGG: gur:Gura_0126 hypothetical protein.
  
     0.429
Slin_2478
Hypothetical protein.
  
    0.429
Slin_5732
Hypothetical protein.
  
     0.424
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.