STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0231PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: dat:HRM2_13790 hypothetical protein. (501 aa)    
Predicted Functional Partners:
Slin_0396
PFAM: protein of unknown function DUF403; KEGG: dat:HRM2_13800 hypothetical protein.
  
 0.988
Slin_1316
Glutamate--cysteine ligase GCS2; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity; Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily.
      0.910
Slin_2855
PFAM: transglutaminase domain protein; transglutaminase domain protein; SMART: transglutaminase domain protein; KEGG: scl:sce0285 hypothetical protein.
 
  
 0.830
Slin_4657
PFAM: transglutaminase domain protein; transglutaminase domain protein; SMART: transglutaminase domain protein; KEGG: tgr:Tgr7_1014 transglutaminase domain protein.
 
  
 0.827
Slin_5599
PFAM: transglutaminase domain protein; SMART: transglutaminase domain protein; KEGG: hch:HCH_03352 transglutaminase-like enzyme, putative cysteine protease.
 
  
 0.825
Slin_2854
KEGG: met:M446_6767 putative proteasome-type protease.
 
  
 0.813
Slin_0230
Hypothetical protein; KEGG: geo:Geob_3131 fibronectin type III domain protein.
       0.524
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.