STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0239PFAM: XisI protein. (115 aa)    
Predicted Functional Partners:
Slin_0238
PFAM: XisH protein; KEGG: neu:NE1909 diguanylate cyclase/phosphodiesterase.
 
   
 0.952
Slin_1545
PFAM: XisH protein.
 
   
 0.798
Slin_1443
KEGG: rpe:RPE_2423 hypothetical protein.
  
     0.710
Slin_1596
PFAM: protein of unknown function DUF820.
  
     0.703
Slin_0341
PFAM: protein of unknown function DUF820; KEGG: noc:Noc_1566 hypothetical protein.
  
     0.694
Slin_5071
PFAM: protein of unknown function DUF820; KEGG: scl:sce4139 hypothetical protein.
  
     0.686
Slin_2896
PFAM: protein of unknown function DUF820; KEGG: hypothetical protein.
  
     0.666
Slin_0240
PFAM: Radical SAM domain protein; KEGG: cbg:CbuG_1165 radical SAM superfamily protein.
       0.661
Slin_4049
PFAM: histidine triad (HIT) protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: pna:Pnap_4872 histidine triad (HIT) protein.
  
     0.615
Slin_0241
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: gsu:GSU0106 soj protein.
       0.521
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.