STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0280PFAM: glycosyl transferase group 1; KEGG: psa:PST_2891 glycosyltransferase. (403 aa)    
Predicted Functional Partners:
Slin_4165
KEGG: psa:PST_2890 UDP-galactopyranose mutase; TIGRFAM: UDP-galactopyranose mutase; PFAM: UDP-galactopyranose mutase-like.
  
 0.981
Slin_0222
KEGG: nmu:Nmul_A2150 amine oxidase.
     0.967
Slin_4161
PFAM: glycoside hydrolase family 1; KEGG: scl:sce3055 hypothetical protein; Belongs to the glycosyl hydrolase 1 family.
 
     0.866
Slin_5261
PFAM: glycoside hydrolase family 1; KEGG: scl:sce3055 hypothetical protein; Belongs to the glycosyl hydrolase 1 family.
 
     0.835
Slin_5470
PFAM: glycoside hydrolase family 1; KEGG: pzu:PHZ_c2076 beta-glucosidase; Belongs to the glycosyl hydrolase 1 family.
     0.807
Slin_2927
PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 TIM barrel; KEGG: scl:sce3052 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 2 family.
  
     0.635
Slin_4132
KEGG: esa:ESA_01275 hypothetical protein.
  
     0.586
Slin_2005
KEGG: geo:Geob_0289 putative outer membrane protein.
  
     0.497
Slin_0281
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rec:RHECIAT_PC0000785 putative glyoxalase protein.
       0.459
Slin_0282
PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: mxa:MXAN_0644 M1 family peptidase.
  
    0.447
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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