STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0291PFAM: glycosyl transferase family 2; KEGG: gbm:Gbem_3309 glycosyl transferase family 2. (312 aa)    
Predicted Functional Partners:
Slin_2951
KEGG: met:M446_0943 glycosyl transferase family protein.
  
     0.772
Slin_0292
MCP methyltransferase, CheR-type; PFAM: Methyltransferase type 12; Methyltransferase type 11; MCP methyltransferase CheR-type; KEGG: gur:Gura_4275 methyltransferase type 11.
 
     0.763
Slin_0289
PFAM: WxcM domain protein domain protein; KEGG: rlt:Rleg2_0404 WxcM domain protein.
 
    0.747
Slin_0290
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: rfr:Rfer_0689 DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
    0.744
Slin_2546
PFAM: glycosyl transferase family 2; KEGG: dol:Dole_1868 glycosyl transferase family protein.
  
     0.692
Slin_5209
PFAM: glycosyl transferase family 2; KEGG: sun:SUN_1537 glycosyl transferase.
  
     0.690
Slin_0293
KEGG: apa:APP7_0407 riboflavin synthase subunit alpha; TIGRFAM: riboflavin synthase, alpha subunit; PFAM: Lumazine-binding protein.
       0.489
Slin_0288
PFAM: protein of unknown function DUF1684; KEGG: xop:PXO_00776 lipoprotein, putative.
       0.437
Slin_2953
PFAM: glycosyl transferase family 2; KEGG: afw:Anae109_0092 glycosyl transferase family protein.
  
     0.414
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.