STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0330Two component transcriptional regulator, LytTR family; PFAM: LytTr DNA-binding region; response regulator receiver; SMART: response regulator receiver; KEGG: hypothetical protein. (254 aa)    
Predicted Functional Partners:
Slin_0331
Signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; KEGG: vpa:VPA0020 hypothetical protein.
 
   0.961
Slin_0422
Signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; KEGG: sde:Sde_3001 DEAD/DEAH box helicase-like.
 
   0.809
Slin_0825
Signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; KEGG: sde:Sde_3901 putative regulator of cell autolysis-like.
 
   0.809
Slin_0905
Signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; KEGG: maq:Maqu_0489 histidine kinase internal region.
 
   0.809
Slin_1724
PFAM: histidine kinase internal region; KEGG: pat:Patl_1150 signal transduction histidine kinase, LytS.
 
   0.809
Slin_2134
PFAM: histidine kinase internal region; KEGG: gur:Gura_2442 signal transduction histidine kinase, LytS.
 
   0.809
Slin_2241
Signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; KEGG: maq:Maqu_0489 histidine kinase internal region.
 
   0.809
Slin_2790
PFAM: histidine kinase internal region; KEGG: pat:Patl_2386 signal transduction histidine kinase, LytS.
 
   0.809
Slin_3174
Hypothetical protein.
 
   0.809
Slin_3925
Signal transduction histidine kinase, LytS; PFAM: histidine kinase internal region; KEGG: sde:Sde_3732 putative regulator of cell autolysis-like.
 
   0.809
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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