STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_04135-carboxymethyl-2-hydroxymuconateDelta- isomerase; PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: aav:Aave_3875 5-carboxymethyl-2- hydroxymuconate delta-isomerase. (284 aa)    
Predicted Functional Partners:
Slin_0415
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: reh:H16_A0743 short chain dehydrogenase.
 0.959
Slin_0608
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: hypothetical protein.
   
 0.907
Slin_0412
PFAM: amidohydrolase 2; KEGG: pat:Patl_0798 amidohydrolase 2.
 
     0.727
Slin_2318
PFAM: amidohydrolase; Amidohydrolase 3; KEGG: ccs:CCNA_03225 parathion hydrolase.
      0.718
Slin_6321
PFAM: homogentisate 12-dioxygenase; KEGG: sdn:Sden_2162 homogentisate 1,2-dioxygenase.
  
  
 0.686
Slin_1062
PFAM: amidohydrolase; Amidohydrolase 3; KEGG: saz:Sama_0087 amidohydrolase.
      0.669
Slin_0310
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bmj:BMULJ_04919 3-oxoacyl-[acyl-carrier protein] reductase.
 
 0.654
Slin_4565
PFAM: amidohydrolase; Amidohydrolase 3; KEGG: mxa:MXAN_2375 amidohydrolase domain- containing protein.
      0.654
Slin_0414
PFAM: protein of unknown function DUF820; KEGG: noc:Noc_2546 hypothetical protein.
       0.506
Slin_1533
3-oxoacid CoA-transferase, B subunit; KEGG: dar:Daro_1021 butyryl-CoA:acetate CoA transferase; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; 3- oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; Belongs to the 3-oxoacid CoA-transferase family.
  
  
 0.471
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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