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Slin_0413 protein (Spirosoma linguale) - STRING interaction network
"Slin_0413" - 5-carboxymethyl-2-hydroxymuconatedelta- isomerase in Spirosoma linguale
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_04135-carboxymethyl-2-hydroxymuconatedelta- isomerase (284 aa)    
Predicted Functional Partners:
Slin_0412
Amidohydrolase 2 (274 aa)
 
        0.777
Slin_0414
Hypothetical protein (203 aa)
              0.579
Slin_6321
Homogentisate 12-dioxygenase (396 aa)
   
   
  0.576
Slin_0311
Hypothetical protein (108 aa)
 
          0.559
mntH
NRAMP family Mn2+/Fe2+ transporter; H(+)-stimulated, divalent metal cation uptake system (448 aa)
       
      0.510
Slin_0733
Natural resistance-associated macrophage protein (422 aa)
       
      0.510
Slin_4880
DNA polymerase III subunit beta; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3’ to 5’ exonuclease activity. The beta chain is required for initiation of replication once it is clamped onto DNA, it slides freely (bidirectional and ATP- independent) along duplex DNA (379 aa)
       
      0.509
Slin_1198
Fumarylacetoacetate hydrolase (278 aa)
 
          0.505
Slin_0415
Short-chain dehydrogenase/reductase SDR (257 aa)
 
          0.498
rpoC
DNA-directed RNA polymerase subunit beta’; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1449 aa)
       
    0.490
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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