STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0429KEGG: mxa:MXAN_1193 hypothetical protein. (636 aa)    
Predicted Functional Partners:
Slin_0428
PFAM: transglutaminase domain protein; KEGG: ade:Adeh_0237 tetratricopeptide protein.
 
    
0.857
Slin_0430
Hypothetical protein.
       0.598
Slin_1185
Hypothetical protein.
 
     0.564
Slin_5362
Hypothetical protein.
  
     0.535
Slin_3592
KEGG: swp:swp_0313 TPR repeat protein.
  
     0.487
Slin_3255
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; KEGG: xau:Xaut_1629 ECF subfamily RNA polymerase sigma-24 factor.
  
     0.460
Slin_3591
PFAM: TonB-dependent receptor plug; KEGG: afw:Anae109_0870 TonB family protein.
  
     0.453
Slin_6635
PFAM: RagB/SusD domain protein; KEGG: mxa:MXAN_4747 putative lipoprotein.
  
     0.440
Slin_2814
KEGG: afw:Anae109_3731 hypothetical protein.
  
     0.434
Slin_0328
Hypothetical protein; KEGG: ade:Adeh_3425 mucin-associated surface protein (MASP), putative.
  
     0.408
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.