STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0475Hypothetical protein. (195 aa)    
Predicted Functional Partners:
Slin_1298
Hypothetical protein.
 
     0.781
Slin_5701
KEGG: hypothetical protein.
  
     0.774
Slin_1306
Hypothetical protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
     0.751
Slin_2385
KEGG: gbm:Gbem_3438 hypothetical protein.
 
     0.734
Slin_2401
PFAM: metallophosphoesterase; KEGG: gme:Gmet_2776 metallophosphoesterase.
 
     0.734
Slin_3227
PFAM: Uroporphyrinogen III synthase HEM4; KEGG: AGAP008064-PA; K01719 uroporphyrinogen-III synthase.
 
     0.733
Slin_4434
TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: dat:HRM2_22410 outer membrane protein (putative surface antigen).
  
     0.729
Slin_4064
KEGG: dal:Dalk_1888 ribosomal protein L17.
  
     0.713
Slin_0476
PFAM: Methylated-DNA-[protein]-cysteine S- methyltransferase DNA binding; KEGG: hypothetical protein.
       0.707
Slin_1528
KEGG: gsu:GSU1489 hypothetical protein.
 
     0.706
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.