STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0520PFAM: nucleoside:H symporter; major facilitator superfamily MFS_1; KEGG: cja:CJA_3342 nucleoside-transport system protein. (404 aa)    
Predicted Functional Partners:
Slin_3461
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: pat:Patl_2687 twin-arginine translocation pathway signal.
 
     0.734
Slin_4771
PFAM: protein of unknown function DUF1080; KEGG: ccs:CCNA_01698 cycloisomaltooligosaccharide glucanotransferase precursor.
 
     0.657
Slin_1890
KEGG: cja:CJA_3100 hypothetical protein.
 
     0.604
Slin_4950
KEGG: amc:MADE_00435 twin-arginine translocation pathway signal.
 
     0.525
Slin_0521
KEGG: bba:Bd3524 exodeoxyribonuclease III; TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: Endonuclease/exonuclease/phosphatase.
       0.516
Slin_0519
KEGG: rso:RSc2294 hypothetical protein.
       0.510
Slin_3462
PFAM: protein of unknown function DUF1080; KEGG: swd:Swoo_0366 hypothetical protein.
 
     0.440
Slin_0522
PFAM: pseudouridine synthase; KEGG: psp:PSPPH_4378 ribosomal large subunit pseudouridine synthase E; Belongs to the pseudouridine synthase RsuA family.
       0.416
Slin_6564
KEGG: cja:CJA_3100 hypothetical protein.
 
     0.412
Slin_5805
KEGG: cak:Caul_4605 hypothetical protein.
 
     0.404
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.