STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0664Hypothetical protein; KEGG: sat:SYN_02443 SUA5/YciO/YrdC/YwlC family protein; Belongs to the SUA5 family. (185 aa)    
Predicted Functional Partners:
Slin_5954
KEGG: neu:NE1230 hypothetical protein.
  
     0.676
Slin_2040
PFAM: Sporulation domain protein; KEGG: hypothetical protein.
 
     0.671
Slin_0665
TIGRFAM: metal dependent phophohydrolase; PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; KEGG: hypothetical protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
     
 0.618
Slin_5538
Hypothetical protein.
  
     0.581
Slin_0554
PFAM: RagB/SusD domain protein.
 
   
 0.558
Slin_5589
Putative phage repressor; PFAM: Peptidase S24, S26A and S26B, conserved region; SMART: helix-turn-helix domain protein; KEGG: sbn:Sbal195_2020 putative phage repressor.
  
    0.527
Slin_4960
KEGG: pmy:Pmen_3315 hypothetical protein.
  
     0.521
Slin_0663
PFAM: protein of unknown function UPF0118; KEGG: mpo:Mpop_0304 protein of unknown function UPF0118.
       0.516
Slin_0367
PFAM: protein of unknown function DUF450; KEGG: cjd:JJD26997_0689 DNA methylase-type I restriction-modification system.
  
     0.499
Slin_2257
TIGRFAM: conserved repeat domain protein; KEGG: CH211-217K17.8; hypothetical LOC798921.
  
     0.498
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.