STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0716KEGG: dal:Dalk_0145 hypothetical protein. (338 aa)    
Predicted Functional Partners:
Slin_4277
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: hypothetical protein.
  
     0.452
Slin_4714
PFAM: Lantibiotic dehydratase domain protein; KEGG: hypothetical protein.
  
     0.432
Slin_0505
Hypothetical protein.
  
     0.429
Slin_0183
Hypothetical protein; KEGG: bba:Bd3266 cell wall surface anchor family protein.
  
   
 0.428
Slin_3426
KEGG: hypothetical protein.
  
    0.409
Slin_0717
TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; KEGG: mno:Mnod_5611 glycosyl transferase, WecB/TagA/CpsF family; Belongs to the glycosyltransferase 26 family.
       0.404
Slin_0718
Hypothetical protein; KEGG: gbm:Gbem_2567 glycosyltransferase.
  
    0.404
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.