STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0721PFAM: glycosyl transferase family 2; KEGG: gur:Gura_3779 glycosyl transferase family protein. (297 aa)    
Predicted Functional Partners:
Slin_0725
PFAM: sugar transferase; KEGG: mno:Mnod_2163 exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
  
  
 0.809
Slin_0724
PFAM: polysaccharide biosynthesis protein; KEGG: pin:Ping_0778 polysaccharide biosynthesis protein.
 
  
 0.805
Slin_0723
PFAM: transferase hexapeptide repeat containing protein; KEGG: rec:RHECIAT_CH0000844 putative fusion protein: glycosyltransferase and acetyltransferase.
 
     0.802
Slin_0726
Capsular exopolysaccharide family; KEGG: sun:SUN_1559 capsular polysaccharide biosynthesis protein; TIGRFAM: capsular exopolysaccharide family; PFAM: lipopolysaccharide biosynthesis protein.
  
  
 0.801
Slin_0727
PFAM: polysaccharide export protein; Soluble ligand binding domain; KEGG: sun:SUN_1557 polysaccharide export system outer membrane protein.
  
  
 0.786
Slin_0722
Hypothetical protein.
       0.773
Slin_5047
PFAM: glycosyl transferase family 2; KEGG: dol:Dole_1298 glycosyl transferase family protein.
  
     0.765
Slin_6387
PFAM: glycosyl transferase family 2; KEGG: gme:Gmet_2879 glycosyl transferase family protein.
  
     0.757
Slin_0720
Acetyltransferase (isoleucine patch superfamily)- like protein; KEGG: ecv:APECO1_4217 putative capsule O-acetyl transferase.
       0.684
Slin_4160
PFAM: glycosyl transferase family 2; KEGG: cti:RALTA_A0580 putative glycosyl transferase, family 2.
  
     0.672
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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