STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0735PFAM: Xylose isomerase domain protein TIM barrel; KEGG: vei:Veis_0067 xylose isomerase domain- containing protein. (312 aa)    
Predicted Functional Partners:
Slin_0439
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: ppr:PBPRB0461 myo-inositol catabolismprotein IolB.
  
  
  0.926
Slin_5789
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: mmw:Mmwyl1_3913 xylose isomerase domain- containing protein.
  
  
  0.920
Slin_1698
PFAM: oxidoreductase domain protein; KEGG: tbd:Tbd_2258 putative glucose-fructose oxidoreductase oxidoreductase protein.
   
 
  0.918
Slin_5067
PFAM: oxidoreductase domain protein; KEGG: mlo:mll4991 myo-inositol dehydrogenase (IdhA).
   
 
  0.918
Slin_5750
PFAM: oxidoreductase domain protein; Semialdehyde dehydrogenase NAD - binding; Oxidoreductase domain; KEGG: scl:sce9140 putative oxidoreductase.
  
 
  0.918
Slin_1842
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rhi:NGR_b21640 putative sugar phosphate isomerase/epimerase IoIE.
  
  
  0.911
Slin_6152
Hypothetical protein.
  
     0.738
Slin_2705
PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: ank:AnaeK_3752 exonuclease RNase T and DNA polymerase III.
  
     0.682
Slin_5396
PFAM: protein of unknown function DUF820.
  
     0.644
Slin_0736
Hypothetical protein.
       0.634
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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