STRINGSTRING
Slin_0735 protein (Spirosoma linguale) - STRING interaction network
"Slin_0735" - Xylose isomerase in Spirosoma linguale
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0735Xylose isomerase (312 aa)    
Predicted Functional Partners:
Slin_1264
Xylose isomerase (274 aa)
         
    0.800
Slin_0439
Xylose isomerase (308 aa)
         
    0.800
Slin_0022
RagB/SusD domain-containing protein (562 aa)
   
          0.772
Slin_0511
Dehydrogenase (1265 aa)
   
          0.740
Slin_5007
Hypothetical protein (568 aa)
   
          0.732
Slin_3419
RagB/SusD domain-containing protein (521 aa)
   
          0.729
Slin_6608
Transcriptional regulator (753 aa)
   
          0.722
Slin_4665
TonB-dependent receptor (739 aa)
   
          0.722
Slin_3421
RagB/SusD domain-containing protein (521 aa)
   
          0.720
Slin_5396
Hypothetical protein (190 aa)
   
          0.712
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale, S. linguale DSM 74, Spirosoma, Spirosoma linguale, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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