STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_0741PFAM: protein of unknown function DUF820; KEGG: scl:sce0505 hypothetical protein. (193 aa)    
Predicted Functional Partners:
Slin_1327
PFAM: protein of unknown function DUF820; KEGG: noc:Noc_2546 hypothetical protein.
  
     0.662
Slin_0742
PFAM: LmbE family protein; KEGG: mxa:MXAN_6192 hypothetical protein.
       0.580
Slin_0743
Hypothetical protein.
       0.580
Slin_0414
PFAM: protein of unknown function DUF820; KEGG: noc:Noc_2546 hypothetical protein.
  
     0.578
Slin_3434
PFAM: protein of unknown function DUF433; KEGG: lch:Lcho_4191 hypothetical protein.
  
     0.559
Slin_0238
PFAM: XisH protein; KEGG: neu:NE1909 diguanylate cyclase/phosphodiesterase.
  
     0.546
Slin_5035
PFAM: protein of unknown function DUF1568; KEGG: sun:SUN_0186 hypothetical protein.
 
     0.542
Slin_0341
PFAM: protein of unknown function DUF820; KEGG: noc:Noc_1566 hypothetical protein.
  
     0.538
Slin_1545
PFAM: XisH protein.
  
     0.526
Slin_5411
PFAM: protein of unknown function DUF1568; KEGG: sml:Smlt1101 hypothetical protein.
 
     0.524
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.